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Supplement to “Reef Collection: Part 1” by Ron Shimek

Aquarium Fish International magazine, August 2012, Vol. 24, No. 8.

May 30, 2012

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Selected References:

Trade Issues:

Anderson, C.N.K., C.H. Hsieh et al. 2008. “Why Fishing Magnifies Fluctuations in Fish Abundance.” Nature, 452:835-839.

Bentley, N. 1998. “An Overview of the Exploitation, Trade and Management of Corals in Indonesia.” TRAFFIC Bulletin, 17:67-78. Cambridge, UK.

Bernardi, G., and A. Vagelli. 2003. “Population Structure in Banggai Cardinalfish, Pterapogon kauderni, a coral reef species lacking a pelagic larval phase.” Marine Biology, 145:1-1.

Bruckner, A.W. 2005. “The Importance of the Marine Ornamental Reef Fish Trade in the Wider Caribbean.” Revista de Biologia Tropical, Vol. 53, Sup. 1.

Chiappone M., D. Swanson, and S. Miller. 2002. “Condylactis gigantea — A Giant Comes Under Pressure from the Aquarium Trade in Florida.” Reef Encounter, 30:29-31.

Erdmann, M. and A. Vagelli. 2001. “Banggai Cardinalfish Invade Lembeh Strait.” Coral Reefs, 20: 252-253.

Halpern, B.S., S. Walbridge, K.A. Selkoe et al. 2008. “A Global Map of Human Impact on Marine Ecosystems.” Science, 319:948-952.

Lunn, K. E. and M.A. Moreau. 2004. “Unmonitored trade in marine ornamental fishes: the case of Indonesia’s Banggai cardinalfish (Pterapogon kauderni).” Coral Reefs, 23:344-351.

Ramachandran, A. 2010. “Ecolabeling and Green Certification for Effective Fisheries Management — An Analysis.” World Academy of Science, Engineering and Technology, 65:766-772.

Sadovy, Y. 2002. “Death in the Live Reef Fish Trades.” SPC Live Reef Fish Information Bulletin, 10:3-5.

Shackell, N.L., K.T. Frank, J.A.D. Fisher et al. 2009. “Decline in Top Predator Body Size and Changing Climate Alter Trophic Structure in an Oceanic Ecosystem.” Proceedings of the Royal Society B: Biological Sciences, 277:1353-1360.

Tissot, B.N., B.A. Best, E.H. Borneman et al. 2010. “How U.S. Ocean Policy and Market Power Can Reform the Coral Reef Wildlife Trade.” Marine Policy, 34:1385-1388.

Wabnitz, C., M. Taylor et al. 2003. “From Ocean to Aquarium: The Global Trade in Marine Ornamental Species.” UNEP-WCMC Biodiversity Series17, Cambridge, UK.


Coral Taxonomic Problems:
Berntson, E.A., F.M. Bayer et al. 2001. “Phylogenetic Relationships Within the Octocorallia (Cnidaria: Anthozoa) Based on Nuclear 18S Rrna Sequences.” Marine Biology, 138:235-246.

Kerr, A. M. 2005. “Molecular and Morphological Supertree of Stony Corals (Anthozoa: Scleractinia) Using Matrix Representation Parsimony.” Biological Reviews, 80:543.

McFadden, C.S., J.A. Sanchez and S.C. France. 2010. “Molecular Phylogenetic Insights into the Evolution of Octocorallia: A Review.” Integrative and Comparative Biology, 50:389.

McFadden, C.S., S.C. France et al. 2006. “A Molecular Phylogenetic Analysis of the Octocorallia (Cnidaria: Anthozoa) Based on Mitochondrial Protein-Coding Sequences.” Molecular Phylogenetics and Evolution, 41:513-527.

McFadden, C.S., P. Alderslade et al. 2006. “Phylogenetic Relationships Within the Tropical Soft Coral Genera Sarcophyton and Lobophytum (Anthozoa, Octocorallia).” Invertebrate Biology, 125:288-305.

Coral Reef Problems:
Alvarez-Filip, L., N.K. Dulvy et al. 2009. “Flattening of Caribbean Coral Reefs: Region-Wide Declines in Architectural Complexity.” Proceedings of the Royal Society B: Biological Sciences, 276:3019.

Aronson, R.B., I.G. Macintyre et al. 2004. “Phase Shifts, Alternative States and the Unprecedented Convergence of Two Reef Systems.” Ecology, 85:1876-1891.

Bellwood, D.R., and T.P. Hughes. 2001. “Regional-Scale Assembly Rules and Biodiversity of Coral Reefs.” Science, 292:1532.

Bruno, J.F. and E.R. Selig. 2007. “Regional Decline of Coral Cover in the Indo-Pacific: Timing, Extent and Subregional Comparisons.” Edited by Rob Freckleton. PLoS ONE 2, no. 8, e711. doi:10.1371/journal.pone.0000711

Carpenter, K.E., M. Abrar, G. Aeby et al. 2008. “One-Third of Reef-Building Corals Face Elevated Extinction Risk from Climate Change and Local Impacts.” Science, 321:560-563.

De’ath, G., J.M. Lough and K.E. Fabricius. 2009. “Declining Coral Calcification on the Great Barrier Reef.” Science, 323:116-119.

Devlin, M.J., and J. Brodie. 2005. “Terrestrial Discharge into the Great Barrier Reef Lagoon: Nutrient Behavior in Coastal Waters.” Marine Pollution Bulletin, 51:9-22.

Diaz-Pulido, G., and L.J. McCook. 2005. “Effects of Nutrient Enhancement on the Fecundity of a Coral Reef Macroalga.” Journal of Experimental Marine Biology and Ecology, 317:13-24.

Doney, S.C., V.J. Fabry et al. 2009. “Ocean Acidification: The Other CO2 Problem.” Annual Review of Marine Science, 1:169-192.

Downs, C.A., C.M. Woodley et al. 2005. “Shifting the Paradigm of Coral-Reef ‘Health’ Assessment.” Marine Pollution Bulletin, 51:486-494.

Edmunds, P.J. 2007. “Evidence for a Decadal-Scale Decline in the Growth Rates of Juvenile Scleractinian Corals.” Marine Ecology Progress Series, 341:1-13.

Fabricius, K.E. 2005. “Effects of Terrestrial Runoff on the Ecology of Corals and Coral Reefs: Review and Synthesis.” Marine Pollution Bulletin, 50:125-146.

Fabricius, K., G. De’ath et al. 2005. “Changes in Algal, Coral and Fish Assemblages Along Water Quality Gradients on the Inshore Great Barrier Reef.” Marine Pollution Bulletin, 51:384-398.

Fisher, W.S., L.S. Fore et al. 2008. “Evaluation of Stony Coral Indicators for Coral Reef Management.” Marine Pollution Bulletin, 56:1737-1745.

Jones, G.P., M.I. McCormick et al. 2004. “Coral Decline Threatens Fish Biodiversity in Marine Reserves.” Proceedings of the National Academy of Sciences of the United States of America, 101:8251.

Lesser, M.P. 2007. “Coral Reef Bleaching and Global Climate Change: Can Corals Survive the Next Century?” Proceedings of the National Academy of Sciences, 104:5259.

McClanahan, T., N. Polunin and T. Done. 2002. “Ecological states and the resilience of coral reefs.” Conservation Ecology, 6:18.

Orr, J.C., V.J. Fabry, O. et al. 2005. “Anthropogenic Ocean Acidification Over the Twenty-First Century and its Impact on Calcifying Organisms.” Nature, 437:681-686.

Osinga, R., M. Schutter, B. Griffioen et al. 2011. “The Biology and Economics of Coral Growth.” Marine Biotechnology, 13:658-671.

Pandolfi, J.M., R.H. Bradbury, E. Sala et al. 2003. “Global Trajectories of the Long-Term Decline of Coral Reef Ecosystems.” Science, 301:955-958.

Robbins, W.D., M. Hisano et al. 2006. “Ongoing Collapse of Coral-Reef Shark Populations.” Current Biology, 16:2314-2319.

Selig, E.R. 2008. “Effects of changing temperatures on coral reef health: Implications for management.” Ph.D. Dissertation, University of North Carolina.

Vezina, A.F and O. Hoegh-Guldberg. 2008. “Effects of Ocean Acidification on Marine Ecosystems.” Marine Ecology Progress Series, 373:199-201.

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